YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16769158
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKQLAEQI DVKRLKAHAL CPQTMAVAVP MLALQLYINP CMFWLARPAY LLLAALKEQK  60
   61 NQQKQSTDIS YDASLCALHA HVTTMDALFQ HEFIIESNRE AAEFETHLQL LLDERVVEVE 120
  121 TSGRINVQDN ECSHVILAAL APFLCLYYQL VVTLRKIPLE LEFSNKELLV RVQQHVEQLL 180
  181 QQPGASASHV HPYCLALDNL NIAIYALIQR GYLVKSRDSG QMKIASTPGK CLRELETQLL 240
  241 EYCQLMPFAQ YSTAANQQAQ FHIAKL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.57
Transmembrane Helix	19	38	0.52
Non-Cytoplasmic	39	266	0.76