YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768736
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLAIHLRL SLVPPSSHPN RRASVRVTIS QPQLGYPTNV GGNGGRTVGA TEVGAGGNGS  60
   61 SAGRTSNSSL GGTSLMKIAT IQGPILNQSQ AAGGNHMVQK VKPTALKPEE PQRNKVRPFK 120
  121 FAFNRVATPT LNLRFLNNRS KRNSLSANAV ATEQKATKVL GLVFFTFVLC WSPFFILNII 180
  181 FAACPECQVP EHVVNTCLWL GYVSSTINPI IYTIFNRTFR AAFIRLLKCN CKRSGRPLRY 240
  241 RSVTEGRGAL SLCAPSALPL AISFQGAPLM TPSTANATPM SEFRASCRTV TDDEC

Type	Start	End	Confidence
Cytoplasmic	1	159	0.97
Transmembrane Helix	160	182	0.90
Non-Cytoplasmic	183	197	0.79
Transmembrane Helix	198	216	0.89
Cytoplasmic	217	247	0.86
Transmembrane Helix	248	267	0.63
Non-Cytoplasmic	268	295	0.70