YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768468
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDVQPRKR KDKRRKRDDD ESSHGVHITK MGNEDLHLHV HHDHGTGGHW CAKIIFFALM  60
   61 AVLLGLVGLI IMENRGLEDL DTPLSESRFS KVFDGWVDEH RDEHDGHDVQ EPSGEALDDH 120
  121 DEHDDHDDHE DEDEEPLTEE LEEELEEEEE PTEEDEPAAD EEYEEDEDEE NNAGENITAE 180
  181 DAVEEEEEED NDDEGTVEAT VEATTEATTE ATGEYEAEED DEDEAAADDD AVESTEAPLS 240
  241 KAEEEDDDED EEEQEIEESV EPARSQYAAQ SAPATDNNDD DDDDDDQDKN DADDGDDDEF 300
  301 ESLDQQFEND PEDTEPAKAV ESEEQDQDQA DEEEPKEEGS SWLASLAVKF GVGVALALVS 360
  361 RLVLIRKSPN TTEDEPAPET IFRRRLTIAT AEDHIPDDVE ELPPLDDEYS EEEIEIEEEI 420
  421 EVEISDIEEE EEEVRHDNDD NVASMASYVP ETFEQLSAMY KYAQEPTKDA KPEQKEKEPE 480
  481 KPVGHSDIYV EYEDGAIEDY EHDGVSDEEI TDEEDEISDV DDADLMNRLE AKYGRLPVKE 540
  541 FESDPDSDDP SWTRNY

Type	Start	End	Confidence
Cytoplasmic	1	49	0.86
Transmembrane Helix	50	72	0.87
Non-Cytoplasmic	73	556	0.87