YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768150
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.85
Transmembrane Helix	30	50	0.94
Cytoplasmic	51	68	0.92
Transmembrane Helix	69	89	0.92
Non-Cytoplasmic	90	100	0.76
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	144	0.93
Transmembrane Helix	145	165	0.93
Non-Cytoplasmic	166	176	0.74
Transmembrane Helix	177	195	0.93
Cytoplasmic	196	204	0.62
Transmembrane Helix	205	229	0.79
Non-Cytoplasmic	230	251	0.94
Transmembrane Helix	252	273	0.91
Cytoplasmic	274	292	0.97
Transmembrane Helix	293	318	0.90
Non-Cytoplasmic	319	352	0.89
Transmembrane Helix	353	379	0.81
Cytoplasmic	380	395	0.93
Transmembrane Helix	396	416	0.93
Non-Cytoplasmic	417	424	0.76
Transmembrane Helix	425	447	0.90
Cytoplasmic	448	453	0.82
Transmembrane Helix	454	471	0.96
Non-Cytoplasmic	472	544	0.97
Transmembrane Helix	545	569	0.84
Cytoplasmic	570	622	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVSNLAS TVATATTATL EDLHFSLTDY IVFSLMLSAS AGIGVYFGFF SKAKNTTEEY  60
   61 LQGGKRMPTL PVAISLVSSQ LSGVAMMSVP AETYSFGFNM IFVVWAMVLS VPVLIYIIVP 120
  121 VFYDNNVSNC YEYLELRFSK RTRQLVTITF ILNQFLMLPV YMFVPSLAFS QVTGYNIHLI 180
  181 NTVVSSICVF YTMLGGIKAV VWTDVVQGSV MLISVVLVAI LGTSNTGGIT NVLENAAEGG 240
  241 RFDFSFGIDP RLRLTFISGM ASGLLMWTGK LGLDQSCVQR IVSLPSYGHA KRCLLMAGVG 300
  301 FLLIMSFTCF TGIIMFAYYY GCDPIQAGLV SKPDKLMPFF IQDIMGHMMG MPGVFISCVF 360
  361 SASLSSLSAS LNSFAGVVYF DYIKPRINHS EAKANATMKL VIVVMGAYCI VGGFIVQNFN 420
  421 SIIQTMWTIT GINMGAVVGV FCLGMFVPRC NAKVAVSGIA FSCLVMLWII INGQMNLKAG 480
  481 LIKYDPLPNG LDQCEAKGFE VILNAIRNKN VTNVGTTAIP SLEAPKELTT AFDSNRDFSI 540
  541 YDTSFYWYKV LGALLVFAWA IPMSYVWPLD KEEKQNPKLY SPFVRSMLNK PSPVLELEEL 600
  601 PLKTPLSEEQ IKEKENGSAT EA