YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768046
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWLTLILVG LFASFLSISM CVAVQPPDDG KLRVCVVESR GVYRKTPKFC PLLEAKSNIE  60
   61 CVIGVDRLDC VRRIHKGTAH FGVLTSEDLV AARWASVEIL VASELRSHES HFEYEIVAVV 120
  121 DNHANIHTVH DLRGARLCHP GYGLGNHWTE VLANYFEAAM VSKTCDPEMT VTEDRIASTA 180
  181 KYFGPSCKAG PWVPDPKQDR ILKNRYPSLC EMCYEPDSCD QTDKHWGRRG ALYCLTSGGG 240
  241 NVAWARLDDV RSHFGFSGIP AQSNPSDFSY LCPDGHLQPL NASQPCVWVA KPWPVVAARR 300
  301 SHAAQVQRLV TGLNHDEPDS WQNALLSLLE TYHVFTVPLD NVIAIDDYLD QATAFQSAYS 360
  361 FPECNPPRSI VFCTTSIIQH IKCS

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	384	0.99