YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16767930
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDVMAPATV SAICSSARLF VWLVVNREWA RLKKSACCRW RRAAAMDLRC TSAVGTTTTK  60
   61 QETVCPSYTP AAPATRTTSD PSRHARTNAD RNPTSRTTKL DKIRAIPSMR SARSSAVHTA 120
  121 FAVWPPGPSQ SARSASARIR ARATVARRAN SAPSMWPVPT IASLLQCVAI FISQESARLF 180
  181 QRMPVDVPGN ATPMPTVVET TSAAATAADS CVCILLVQLS RPGLRLQWSP IRAMPEPLWN 240
  241 PRRRMSLMSR QPSAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.66
Transmembrane Helix	6	25	0.59
Cytoplasmic	26	151	0.79
Transmembrane Helix	152	173	0.68
Non-Cytoplasmic	174	255	0.63