YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11878241
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQLTPSKQ AASSLENLKM NDSPVKKLNF EAAGKENAPV SNPMVDVPAT KPATEKPVEP  60
   61 SKAALDVKAI EANEPLLQEN PHRFVLFPIK YHEIWQMYKK AEASFWTAEE IDLSKDLHDW 120
  121 NNRLNEDERY FISRVLAFFA ASDGIVNENL LERFSGEVQI PEARCFYGFQ IMIENIHAET 180
  181 YSLLIDTYIK EPKQRTYLFD AIDTIPCIRK KADWAIKWIQ DKESTFAQRL VAFAAVEGIF 240
  241 FSGSFASIFW LKKRGLMPGL TFSNELISRD EGLHTDFACL LFSHLNWRPS KKVVEDIIVE 300
  301 AVAIEKEFLT DALPCALLGM NAKLMCQYIE FVADRLLVAL GNKEYFNATN PFDFMESISL 360
  361 AGKTNFFEKR VGDYQKAGVM ASTKKDPKQD ETKTSDGNGL SFDEDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	229	0.86
Transmembrane Helix	230	251	0.75
Cytoplasmic	252	406	0.66