YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25006060, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSFFDQFM SPVYLGIPLI ALALTLPWIL YPTPSARWLN NRLLTLQGWF INRFTQQLLL  60
   61 PLNPGGHKWA TLFTSLMIFL ISLNMLGLLP YTFTPTTQLS LNMGLAVPLW LATVIIGMRN 120
  121 QPTHALGHLL PEGTPTPLIP VLIIIETISL FIRPLALGVR LTANLTAGHL LIQLIATAAF 180
  181 VLLPLMPTVA ILTAILLFLL TLLEVAVAMI QAYVFVLLLS LYLQENV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.79
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	68	0.80
Transmembrane Helix	69	89	0.93
Cytoplasmic	90	98	0.68
Transmembrane Helix	99	118	0.92
Non-Cytoplasmic	119	135	0.79
Transmembrane Helix	136	157	0.86
Cytoplasmic	158	166	0.72
Transmembrane Helix	167	192	0.79
Non-Cytoplasmic	193	193	0.41
Transmembrane Helix	194	223	0.77
Cytoplasmic	224	227	0.85