YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16648454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYVIITSAS LVWFLCSLVA DMLFAVALVT PRWLVGPAQG TDSTASSHRQ SSVGIYTRCK  60
   61 VMQEGGFQCG RFDLDGLATD SSVYPNEWKA AMFFVMLGFS LLSVTVILTL ITCCRQSACG 120
  121 KSIHNMTACA QVVAGICMML GLFLHPMGWR ANRIQRLCGM DAEPFYPADC SIGVSFYCGI 180
  181 IGVLLTFTAA GISLKAESSN MRTRVRRRVE AGSKLVCIP

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	89	0.97
Transmembrane Helix	90	113	0.91
Cytoplasmic	114	122	0.90
Transmembrane Helix	123	145	0.88
Non-Cytoplasmic	146	172	0.91
Transmembrane Helix	173	194	0.93
Cytoplasmic	195	219	0.95