YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16648198
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSMYAFPLI MFIYCYGAIY LEIYRKSQRV LKDVIAERFR RSNDDVLSRA KKRTLKMTIT  60
   61 IVIVFIICWT PYYTISMWYW LDKHSAGKIN PLLRKALFIF ASTNSCMNPL VYGLYNIRGR 120
  121 MNNNNPSVNN RHTSLSNRLD SSNQLMQKQL TNNSLLNGRG QVMAAAVSAT TKLANVVSLK 180
  181 GTANGNGSAA AAGTVPITPP LTVTIAPLAT DDEANDDSCL SAVTIRCQDQ SPIRQK

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.71
Transmembrane Helix	5	24	0.71
Cytoplasmic	25	56	0.97
Transmembrane Helix	57	75	0.95
Non-Cytoplasmic	76	95	0.82
Transmembrane Helix	96	115	0.85
Cytoplasmic	116	236	0.89