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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|22002428
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALATSQLV TTRAGFGLGD ASSSMFRPGV QGLRGSRASS PAATLSVRTS ARAAPRQQHR  60
   61 RAQRGARFPS LVVCATAGMN VVFVGAEMAP WSKTGGLGDV LGGLPPAMAA NGHRVMVISP 120
  121 RYDQYKDAWD TSVVSEIKVG DRYERVRFFH CYKRGVDRVF IDHPSFLERV WGKTGEKIYG 180
  181 PDAGVDYKDN QLRFSLLCQA ALEAPRILSL NNNPYFSGPY GEDVVFVCND WHTGPLSSYL 240
  241 KSNYQSNGIY RNAKTAFCIH NISYQGRFAF SDYPELNLPE RFRSSFDFID GYEKPVEGRK 300
  301 INWMKAGIIE ADRVLTVSPY YAEELISGIA RGCELDNIMR LTGITGIVNG MDVSEWDPSK 360
  361 DKYIATKYDV STAIAAKALN KEALQAAAGL PVDRKIPLVA FVGRLEEQKG PDVMAAAIPQ 420
  421 LMEEDVQIVL LGTGKKKFER MLMSAEEKYP DKVRAVVKFN AAVAHHIMAG ADLLAVTSRF 480
  481 EPCGLIQLQG MRYGTPCVCA STGGLVDTVI EGKTGFHMGR LSVDCKVVEP ADVQKVASTL 540
  541 KRAIKVVGTP AYEEMVRNCM IQDLSWKGPA KNWENVLLSL GVAGSQPGIE GEEIAPLAKE 600
  601 NVAAP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle