YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16580103
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	343	0.97
Transmembrane Helix	344	366	0.90
Cytoplasmic	367	378	0.85
Transmembrane Helix	379	400	0.83
Non-Cytoplasmic	401	430	0.83
Transmembrane Helix	431	452	0.92
Cytoplasmic	453	461	0.77
Transmembrane Helix	462	482	0.87
Non-Cytoplasmic	483	504	0.94
Transmembrane Helix	505	526	0.89
Cytoplasmic	527	541	0.90
Transmembrane Helix	542	562	0.92
Non-Cytoplasmic	563	599	0.94
Transmembrane Helix	600	618	0.94
Cytoplasmic	619	638	0.84
Transmembrane Helix	639	662	0.88
Non-Cytoplasmic	663	669	0.82
Transmembrane Helix	670	689	0.61
Cytoplasmic	690	698	0.57
Transmembrane Helix	699	718	0.73
Non-Cytoplasmic	719	723	0.60
Transmembrane Helix	724	748	0.82
Cytoplasmic	749	768	0.84
Transmembrane Helix	769	788	0.80
Non-Cytoplasmic	789	792	0.68
Transmembrane Helix	793	812	0.78
Cytoplasmic	813	849	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQRNQELQW VEAAHWIGLE ENLREDGVWG RPHLSYLTFW SLLELQKVFS KGTFLLDLAE  60
   61 TSLAGVANKP LDSFIYEDQI RPQDRDELLR ALLLKRSHAE DLKDLEGVKP AVLTRSGAPS 120
  121 EPLLPHQPSL ETKLYCAQAE GGSEEPSPSG ILKTPPNSET TLVLVGRASF LVKPVLGFVR 180
  181 LKEAVPLEDL VLPEPVSFLL VLLGPEAPHI DYTQLGRAAA TLMTERVFRV TASLAQSRGE 240
  241 LLSSLDSFLD CSLVLPPTEA PSEKALLNLV PVQKELLRKR YLPRPAEPDP NLYEALADGG 300
  301 KEGPGDEDDP LRRTGRIFGG LIRDIRRRYP YYLSDITDAL SPQVLAAVIF IYFAALSPAV 360
  361 TFDGLLGEKT RNLMGVSELL ISTAVQGILF ALLGAQPLLV LGFSGPLLVF EEAFYSFCES 420
  421 NNLEYIVGRA WIGFWLILLV VLVVAFEGSF LVQYISRYTQ EIFSFLISLI FIYETFSKLI 480
  481 KIFQDYPLQE SYAPVVMKPK PQGPVPNTAL LSLVLMVGTF LLAMMLRKFK NSTYFPGKLR 540
  541 RVIGDFGVPI SILIMVLVDT FIKNTYTQKL SVPDGLKVSN SSARGWVIHP LGLYNHFPKW 600
  601 MMFASVLPAL LVFILIFLES QITTLIVSKP ERKMIKGSGF HLDLLLVVGM GGVAALFGMP 660
  661 WLSATTVRSV THANALTVMG KASGPGAAAQ IQEVKEQRIS GLLVSVLVGL SILMEPILSR 720
  721 IPLAVLFGIF LYMGITSLSG IQLFDRILLL FKPPKYHPDV PFVKRVKTWR MHLFTDIQII 780
  781 CLAVLWVVKS TPASLALPFV LILTVPLRRL LLPLIFRELE LQCLDGDDAK VTFDEAEGLD 840
  841 EYDEVPMPV