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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LMPA_DICDI
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRGCCHRK MVNHKGCLVS GIFLAVIGAV LFILAFALLP HLINQTTQNA VIQAVIVDST  60
   61 SSQRYNDWAG QQSIENYYQQ YFYAWNLTNP NEFLNGSIPI FETVGPFNYK YEFNFSNVTF 120
  121 QDGGNLATYT QSKSFIYQSD MSPNDPNEIM ITNINPAYLG LMFQLAPNAE LLDNMPAENL 180
  181 LIALSGCGQM RLFLEYLSSD NFTNIVYFTQ NPKLYQEQYL NILKSLNGDE QYFYQQWANA 240
  241 TSIPQKGNGW YGMLVSSVNN NNESSNISIL SAKLLFNSSN ENSILNQEIG STLWINALLG 300
  301 DKTSITVLTS ELQLTVDQID MILNWWLNDF SKVYTESYVN EICDIPDISM LGVCQFVTGN 360
  361 ALNGRSISNY TFLTQPFDQG PIEIPLLYQS IGIDVKLSVS VQQAYKSLFN ESDSNSILNL 420
  421 NGLVNFLTAS KSFDTFKQYN VTLFDAIKII GYATAELYEQ YNKPTILGLY EKYGGLIVTR 480
  481 SMDDWLWNCQ DGILDYLGVD QPCALQQNNT VNKPSTIFTG QQDLSMTNQI FEFQEQTFLT 540
  541 CWNGSVQVEG FTESGQFPPL QSDPPQTMTL FEENVIRPVQ LELSGDSQVQ GIDTKRYYLV 600
  601 NNSFPISTTF KTTIPGFANL TDIQNLPIYV SLWDMYEVPP QYSSNNLQGL NQTYQSAQVP 660
  661 LDLEPITGNA LYYNLKLQIN LAIPEFSNWF SSNSTFKNMK SNVFYPILKI GQTATPSQSN 720
  721 IDLLNSQFKL IKILGFVPVI VVSIIGGIIL IAGISMFAFG FKKLRQQKQQ GYQAIINNE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle