YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NYC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN  60
   61 GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV QIARYIVTMT STGAILLIGF 120
  121 QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE 180
  181 FLLSGDRVIV TSRSSESVDM TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE 240
  241 DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD 300
  301 VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP 360
  361 GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV VKGSGKAVNY LTPPRILLAI 420
  421 VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC 480
  481 AFIILQSTTP SSFPGT

Type	Start	End	Confidence
Cytoplasmic	1	101	0.99
Transmembrane Helix	102	124	0.89
Non-Cytoplasmic	125	132	0.86
Transmembrane Helix	133	153	0.95
Cytoplasmic	154	468	0.97
Transmembrane Helix	469	489	0.84
Non-Cytoplasmic	490	496	0.82