YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4633670, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.71
Transmembrane Helix	123	143	0.70
Non-Cytoplasmic	144	210	0.57
Transmembrane Helix	211	234	0.86
Cytoplasmic	235	339	0.89
Transmembrane Helix	340	362	0.82
Non-Cytoplasmic	363	371	0.80
Transmembrane Helix	372	395	0.93
Cytoplasmic	396	744	0.86
Transmembrane Helix	745	765	0.65
Non-Cytoplasmic	766	777	0.59
Transmembrane Helix	778	798	0.75
Cytoplasmic	799	807	0.54
Transmembrane Helix	808	830	0.65
Non-Cytoplasmic	831	865	0.54
Transmembrane Helix	866	889	0.87
Cytoplasmic	890	906	0.54
Transmembrane Helix	907	922	0.40
Non-Cytoplasmic	923	939	0.66
Transmembrane Helix	940	965	0.83
Cytoplasmic	966	1277	0.70
Transmembrane Helix	1278	1297	0.77
Non-Cytoplasmic	1298	1316	0.49
Transmembrane Helix	1317	1338	0.82
Cytoplasmic	1339	1346	0.48
Transmembrane Helix	1347	1361	0.71
Non-Cytoplasmic	1362	1362	0.02
Transmembrane Helix	1363	1377	0.58
Cytoplasmic	1378	1413	0.50
Transmembrane Helix	1414	1436	0.88
Non-Cytoplasmic	1437	1515	0.67
Transmembrane Helix	1516	1538	0.93
Cytoplasmic	1539	1609	0.92
Transmembrane Helix	1610	1632	0.81
Non-Cytoplasmic	1633	1646	0.78
Transmembrane Helix	1647	1667	0.87
Cytoplasmic	1668	1740	0.53
Transmembrane Helix	1741	1767	0.76
Non-Cytoplasmic	1768	1830	0.51
Transmembrane Helix	1831	1853	0.73
Cytoplasmic	1854	2288	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEDGAGA EESGQPRSFT QLNDLSGAGG RQGPGSTEKD PGSADSEAEG LPYPALAPVV  60
   61 FFYLSQDSRP RSWCLRTVCN PWFERVSMLV ILLNCVTLGM FRPCEDIACD SQRCRILQAF 120
  121 DDFIFAFFAV EMVVKMVALG IFGKKCYLGD TWNRLDFFIV IAGMLEYSLD LQNVSFSAVR 180
  181 TVRVLRPLRA INRVPSMRIL VTLLLDTLPM LGNVLLLCFF VFFIFGIVGV QLWAGLLRNR 240
  241 CFLPENFSLP LSVDLEPYYQ TENEDESPFI CSQPRENGMR SCRSVPTLRG EGGGGPPCSL 300
  301 DYETYNSSSN TTCVNWNQYY TNCSAGEHNP FKGAINFDNI GYAWIAIFQV ITLEGWVDIM 360
  361 YFVMDAHSFY NFIYFILLII VGSFFMINLC LVVIATQFSE TKQRESQLMR EQRVRFLSNA 420
  421 STLASFSEPG SCYEELLKYL VYILRKAARR LAQVSRAIGV RAGLLSSPVA RSGQEPQPSG 480
  481 SCTRSHRRLS VHHLVHHHHH HHHHYHLGNG TLRVPRASPE IQDRDANGSR RLMLPPPSTP 540
  541 TPSGGPPRGA ESVHSFYHAD CHLEPVRCQA PPPRCPSEAS GRTVGSGKVY PTVHTSPPPE 600
  601 ILKDKALVEV APSPGPPTLT SFNIPPGPFS SMHKLLETQS TGACHSSCKI SSPCSKADSG 660
  661 ACGPDSCPYC ARTGAGEPES ADHVMPDSDS EAVYEFTQDA QHSDLRDPHS RRRQRSLGPD 720
  721 AEPSSVLAFW RLICDTFRKI VDSKYFGRGI MIAILVNTLS MGIEYHEQPE ELTNALEISN 780
  781 IVFTSLFALE MLLKLLVYGP FGYIKNPYNI FDGVIVVISV WEIVGQQGGG LSVLRTFRLM 840
  841 RVLKLVRFLP ALQRQLVVLM KTMDNVATFC MLLMLFIFIF SILGMHLFGC KFASERDGDT 900
  901 LPDRKNFDSL LWAIVTVFQI LTQEDWNKVL YNGMASTSSW AALYFIALMT FGNYVLFNLL 960
  961 VAILVEGFQA EEIGKREDAS GQLSCIQLPV NSQGGDATKS ESEPDFFSPS VDGDGDRKKR1020
 1021 LALVALGEHA ELRKSLLPPL IIHTAATPMS LPKSSSTGVG EALGSGSRRT SSSGSAEPGA1080
 1081 AHHEMKSPPS ARSSPHSPWS AASSWTSRRS SRNSLGRAPS LKRRSPSGER RSLLSGEGQE1140
 1141 SQDEEESSEE DRASPAGSDH RHRGSLEREA KSSFDLPDTL QVPGLHRTAS GRSSASEHQD1200
 1201 CNGKSASGRL ARTLRTDDPQ LDGDDDNDEG NLSKGERIQA WVRSRLPACC RERDSWSAYI1260
 1261 FPPQSRFRLL CHRIITHKMF DHVVLVIIFL NCITIAMERP KIDPHSAERI FLTLSNYIFT1320
 1321 AVFLAEMTVK VVALGWCFGE QAYLRSSWNV LDGLLVLISV IDILVSMVSD SGTKILGMLR1380
 1381 VLRLLRTLRP LRVISRAQGL KLVVETLMSS LKPIGNIVVI CCAFFIIFGI LGVQLFKGKF1440
 1441 FVCQGEDTRN ITNKSDCAEA SYRWVRHKYN FDNLGQALMS LFVLASKDGW VDIMYDGLDA1500
 1501 VGVDQQPIMN HNPWMLLYFI SFLLIVAFFV LNMFVGVVVE NFHKCRQHQE EEEARRREEK1560
 1561 RLRRLEKKRR NLMLDDVIAS GSSASAASEA QCKPYYSDYS RFRLLVHHLC TSHYLDLFIT1620
 1621 GVIGLNVVTM AMEHYQQPQI LDEALKICNY IFTVIFVFES VFKLVAFGFR RFFQDRWNQL1680
 1681 DLAIVLLSIM GITLEEIEVN ASLPINPTII RIMRVLRIAR VLKLLKMAVG MRALLDTVMQ1740
 1741 ALPQVGNLGL LFMLLFFIFA ALGVELFGDL ECDETHPCEG LGRHATFRNF GMAFLTLFRV1800
 1801 STGDNWNGIM KDTLRDCDQE STCYNTVISP IYFVSFVLTA QFVLVNVVIA VLMKHLEESN1860
 1861 KEAKEEAELE AELELEMKTL SPQPHSPLGS PFLWPGVEGV NSPDSPKPGA PHTTAHIGAA1920
 1921 SGFSLEHPTM VPHPEEVPVP LGPDLLTVRK SGVSRTHSLP NDSYMCRNGS TAERSLGHRG1980
 1981 WGLPKAQSGS ILSVHSQPAD TSCILQLPKD VHYLLQPHGA PTWGAIPKLP PPGRSPLAQR2040
 2041 PLRRQAAIRT DSLDVQGLGS REDLLSEVSG PSCPLTRSSS FWGGSSIQVQ QRSGIQSKVS2100
 2101 KHIRLPAPCP GLEPSWAKDP PETRSSLELD TELSWISGDL LPSSQEEPLS PRDLKKCYSV2160
 2161 ETQSCRRRPG SWLDEQRRHS IAVSCLDSGS QPRLCPSPSS LGGQPLGGPG SRPKKKLSPP2220
 2221 SISIDPPESQ GSRPPCSPGV CLRRRAPASD SKDPSVSSPL DSTAASPSPK KDTLSLSGLS2280
 2281 SDPTDMDP