YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31874596
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAGRALSSGR AATVGALFAG VTALMAAASV TPPGSLELLQ PGFSKTLLGT KLEAKYLCSA  60
   61 CRNVLRRPFQ AQCGHRYCSF CLASILSSGP QNCAACVHEG IYEEGISILE SSSAFPDNAA 120
  121 RREVESLPAV CPSDGCTWKG TLKEYESCHE GRCPLMLTEC PACKGLVRLG EKERHLEHEC 180
  181 PERSLSCRHC RAPCCGADVK FQDHVKTCGK CRVPCRFHAI GCLETVEGEK QQEHEVQWLR 240
  241 EHLAMLLSSV LEAKPLLGDQ SHAGSELLQR CESLEKKTAT FENIVCVLNR EVERVAMTAE 300
  301 ACSRQHRLDQ DKIEALSSKV QQLERSIGLK DLAMADLEQK VLEMEASTYD GVFIWKISDF 360
  361 ARKRQEAVAG RIPAIFSPAF YTSRYGYKMC LRIYLNGDGT GRGTHLSLFF VVMKGPNDAL 420
  421 LRWPFNQKVT LMLLDQNNRE HVIDAFRPDV TSSSFQRPVN DMNIASGCPL FCPVSKMEAK 480
  481 NSYVRDDAIF IKAIVDLTGL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	31	0.90
Non-Cytoplasmic	32	500	0.99