YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31874036
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSPKQRLGH ELTRDSGGGG PFGHLLAECS LLTGTDFNIM AGRHQNRSFP LPGVQSSGQV  60
   61 HAFGNCSDSD ILEEDAEVYE LRSRGKEKVR RSTSRDRLDD IIVLTKDIQE GDTLNAIALQ 120
  121 YCCTVADIKR VNNLISDQDF FALRSIKIPV KKFSSLTETL CPPKGRQTSR HSSVQYSSEQ 180
  181 QEILPANDSL AYSDSAGSFL KEVDRDIEQI VKCTDNKREN LNEVVSALTA QQMRFEPDNK 240
  241 NTQRKDPYYG ADWGIGWWTA VVIMLIVGII TPVFYLLYYE ILAKVDVSHH STVDSSHLHS 300
  301 KITPPSQQRE MENGIVPTKG IHFSQQDDHK LYSQDSQSPA AQQET

Type	Start	End	Confidence
Cytoplasmic	1	253	0.64
Transmembrane Helix	254	278	0.85
Non-Cytoplasmic	279	345	0.68