YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46485108, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCRSYRVSS GRRVGNFSSC SAMTPQHLNR FRASSVSCRS GPGFRGLGGF GSRSVINFGS  60
   61 SSPRIAVGCS RPIRYGVGFG AGNGIAFGSG DGSGICLGYR AGSGVGLGFG AGSCLGYGFG 120
  121 GPGFGGPGFG GPGFGYRIGG IGGPSAPAIT AVTVNQSLLT PLNLEIDPNA QRVKKDEKEQ 180
  181 IKTLNNKFAS FIDKVRFLEQ QNKLLETKWS FLQDQKCARS NLEPLFDNYI TSLRRQLDVL 240
  241 VSDQARLQAE RNHMQDILEG FKKKYEEEVV FRANAENEFV ALKKDVDAAF LNKSDLEANV 300
  301 DALAQEIEFL KALYLEEIQL LQSHISETSV IVKMDNSRDL NLDGIIAEVK AQYEEVARRS 360
  361 RADVESWYQT KYEEMRVTAG QHCDNLRNTR DEINELTRLI QRLKTEIEHT KAQCAKLEAA 420
  421 VAEAEQQGEA ALNDAKCKLT DLEGALQQAK QDMARQLREY QELMNAKLAL DIEIVTYRKL 480
  481 LEGEEIRICE GVGPVNICKY LPLSQTVSSL PIKFPFGTCG DQEAPKIADL AKTYSHGRRA 540
  541 ISVPRLCVLS RGSQNKE

Type	Start	End	Confidence
Cytoplasmic	1	72	0.77
Transmembrane Helix	73	90	0.59
Non-Cytoplasmic	91	104	0.53
Transmembrane Helix	105	125	0.71
Cytoplasmic	126	132	0.54
Transmembrane Helix	133	154	0.66
Non-Cytoplasmic	155	557	0.85