YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56847618, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCSRQFTS SSSMKSSCGI GGGSSRMSSV LAGGSCRAPS TYGGMSVTSS RFSSGAACGI  60
   61 GGGYSGGFSS SSFGGGFGGG LGGGFGGGLG GGFGGGLGDG LLVGSEKVTM QNLNDRLATY 120
  121 LDKVRALEEA NSDLEVKIRD WYQRQRPTEI KDYTPFFRTI EDLQSKIVRA KQENAQSVLQ 180
  181 IDNARLAAND FRTKYDNETS LRQLVESDIN NLRRVLDELT MSRADLEMQI ESLREELAYL 240
  241 KKNHEEEMLA LRGQTGGDVN VEMDAAPGVD LSRILNEMRD QYEQMAEKNR RDVEAWFQSK 300
  301 TEELNQEVAS NHELIQSGRS EVSELRRVFQ GLEIELQSQL SMKASLENSL EETKGRYCVQ 360
  361 LSQIQGLIGS LEEQLAQLRC EMEQQSQEYN ILLDVKTRLE QEIATYRRLL DGENVHSSSS 420
  421 QHSSGQSYSS GEVFSSSSRQ PRSILKEQGS TSFSQSQSQS SGY

Type	Start	End	Confidence
Cytoplasmic	1	46	0.65
Transmembrane Helix	47	68	0.56
Non-Cytoplasmic	69	80	0.54
Transmembrane Helix	81	103	0.68
Cytoplasmic	104	463	0.59