YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C14_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCSRQFTS SSSMKGSCGI GGGSSRMSSV LAGGSCRAPS TYGGMSRFSS AGAYAVGSGY  60
   61 GGGFSSSSFG GGFGGGIGGG IGGGLGGGIG GGFGGGIGGG FGGGIGSGFG GGLGDGLLVG 120
  121 SEKVTMQNLN DRLATYLDKV RALEEANSDL EVKIRDWYQR QRPTEIKDYS PYFKTIEDLK 180
  181 SKILAATVDN ANVLLQIDNA RLAADDFRTK FETEQSLRIN VESDINGLRR VLDELTLARA 240
  241 DLEMQIESLK EELAYLKKNH EEEMASMRGQ VGGDVNVEMD AAPGVDLSRI LNEMRDQYEK 300
  301 MAEKNRKDAE DWFFTKTEEL NREVATNSEL VQSGKSEISE LRRTMQNLEI ELQSQLSMKA 360
  361 SLENNLEETK GRYCMQLAQI QEMIGSVEEQ LAQLRCEMEQ QNQEYKILLD VKTRLEQEIA 420
  421 TYRRLLEGED AHLSSAQFSS SSQFSSGSQS SRDVTSTNRQ IRTKVMDVHD GKVVSTHEQV 480
  481 LRTKN

Type	Start	End	Confidence
Cytoplasmic	1	50	0.70
Transmembrane Helix	51	83	0.65
Non-Cytoplasmic	84	84	0.31
Transmembrane Helix	85	119	0.70
Cytoplasmic	120	485	0.59