YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K2C1_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQCSSRSL CRSGGGGGGR NFSSGSAGLV SFQRRSTSSS MRRSGGGGGG RFSGGGFCGS  60
   61 SGGGFGSKSL VNLGGGRSIS ISVAGGGSSY GGGFGGGSYG GGSFGGGSFG GGVGGGFGGG 120
  121 GFGGGGFGSG GGFGGGRFGG GFGPVCPPGG IQEVTINQSL LQPLNVEVDP QIQKVKSQER 180
  181 EQIKSLNDKF ASFIDKVRFL EQQNQVLQTK WELLQQVDTS TRTQNLDPFF ESYISNLRRQ 240
  241 VDSLKNDQSR MDSELKNMQD LVEEYRTKYE DEINKRTNAE NEFVTIKKDV DSAYMNKAEL 300
  301 QARVDNLQQD IDFFSTLYQM ELSQMQTQIS ETNVVLSMDN NRTLDLDGII AEVKAQYDSI 360
  361 CQRSKAEAET FYQSKYEELQ ITAGKHGDSV KNTKMEISEL NRVIQRLRSE IDSVKKQISQ 420
  421 MQQNISDAEQ RGEKALKDAQ NKLNEIEDAL TQAKEELTRL LRDYQELMNT KLALDMEIAT 480
  481 YRKLLEGEEI RMSGECTPNV SVSVSTSHTS MSGTSSRGGG RYGSGGGGGG GTYGGGSRGG 540
  541 SYGGGSGGGS YGGCSSGGGS GGGSYGGGSS GGHRGGSGGG GGSSGGSYGG SSGGGRGGSS 600
  601 SGGGVKSSGS SSVKFVSTTY SRGTN

Type	Start	End	Confidence
Cytoplasmic	1	47	0.80
Transmembrane Helix	48	67	0.62
Non-Cytoplasmic	68	80	0.45
Transmembrane Helix	81	115	0.59
Cytoplasmic	116	116	0.04
Transmembrane Helix	117	151	0.59
Non-Cytoplasmic	152	625	0.73