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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30268341
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVWLNKDDYI RDLKRIILCF LIVYMAILVG TDQDFYSLLG VSKTASSREI RQAFKKLALK  60
   61 LHPDKNPNNP NAHGNFLKIN RAYEVLKDED LRKKYDKYGE KGLEDNQGGQ YESWNYYRYD 120
  121 FGIYDDDPEI ITLERREFDA AVNSGELWFV NFYSPGCSHC HDLAPTWRDF AKEVDGLLRI 180
  181 GAVNCGDDRM LCRMKGVNSY PSLFIFRSGM APVKYHGDRS KESLVSFAMQ HVRSTVTELW 240
  241 TGNFVNSIQT AFAAGIGWLI TFCSKGGDCL TSQTRLRLSG MLDGLVNVGW MDCATQDNLC 300
  301 KSLDITTSTT AYFPPGATLN NKEKNSILFL NSLDAKEIYL EVIHNLPDFE LLSANTLEDR 360
  361 LAHHRWLLFF HFGKNENSND PELKKLKTLL KNDHIQVGRF DCSSAPDICS NLYVFQPSLA 420
  421 VFKGQGTKEY EIHHGKKILY DILAFAKESV NSHVTTLGPQ NFPANDKEPW LVDFFAPWCP 480
  481 PCRALLPELR RASNLLYGQL KFGTLDCTVH EGLCNMYNIQ AYPTTVVFNQ SNIHEYEGHH 540
  541 SAEQILEFIE DLMNPSVVSL TPTAFNELVT QRKHNEVWMV DFYSPWCHPC QVLMPEWKRM 600
  601 ARTLTGLINV GSIDCQQYHS FCAQENVQRY PEIRFFPPKS NKAYQYHSYN GWNRDAYSLR 660
  661 IWGLGFLPQV STDLTPQTFS EKVLQGKNHW VIDFYAPWCG PCQNFAPEFE LLARMIKGKV 720
  721 KAGKVDCQAY AQTCQKAGIR AYPTVKFYFY ERAKRNFQEE QINTRDAKAT AALISEKLET 780
  781 LRNQGKRNKD EL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle