YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42516524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHSLRYFETA VSQPGLGEPP VISVGFVDDT QFVRYDSDEE NPKYEPRARW MEREGPEYWE  60
   61 RETQRAKGNE QWSRVNLGTA LRYYNQSEGG SHTMQRLSGC AVGSDGSLLR GYDQYAYDGR 120
  121 DYIALNEDLK TWTAADTAAQ ITQSKWDQAG EAERSRAYLE GKCVEWLLRY LELGKETLLR 180
  181 SDPPKAHMTL HPRPEGDVTL RCWALGFYPA DITLTWQLNG EDLTQDMELV ETRPAGDGTF 240
  241 QKWASVVVPL GKEQSYTCHV EHEGLPEPLT LRWEPPPSTD FNVRIIAVLV VLGAVAIIGP 300
  301 VVAVVMKRRR NTGGTGGDYA PASGKTSPNS CDVSLPDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	284	0.95
Transmembrane Helix	285	305	0.95
Cytoplasmic	306	340	0.95