YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT1_GORGO
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPPSHRQLC RAFLLVCVFS VISFFLHIHQ DSFPHGLGLS ILCPDRRLVT PPVAIFCLPG  60
   61 TAMGPNASSS CPQHPASLSG TWTVYPNGRF GNQMGQYATL LALAQLNGRR AFILPAMHAA 120
  121 LAPVFRITLP VLAPEVDSRT PWRELQLHDW MSEEYADLGD PFLKLSGFPC SWTFFHHLRE 180
  181 QIRREFTLHD HLREEAQSVL GQLRLGRTGD RPRTFVGVHV RRGDYLQVMP QRWKGVVGDS 240
  241 AYLRQAMDWF RARHEAPVFV VTSNGMEWCK ENIDTSQGDV TFAGDGQEAT PWKDFALLTQ 300
  301 CNHTIMTIGT FGFWAAYLAG GDTVYLANFT LPDSEFLKIF KPEAAFLPEW VGINADLSPL 360
  361 WTLAKP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	29	0.80
Non-Cytoplasmic	30	366	0.71