YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7108599
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.85
Transmembrane Helix	14	33	0.80
Non-Cytoplasmic	34	51	0.82
Transmembrane Helix	52	75	0.82
Cytoplasmic	76	142	0.97
Transmembrane Helix	143	163	0.94
Non-Cytoplasmic	164	182	0.79
Transmembrane Helix	183	202	0.96
Cytoplasmic	203	209	0.88
Transmembrane Helix	210	234	0.87
Non-Cytoplasmic	235	259	0.93
Transmembrane Helix	260	279	0.89
Cytoplasmic	280	288	0.69
Transmembrane Helix	289	311	0.85
Non-Cytoplasmic	312	331	0.90
Transmembrane Helix	332	358	0.81
Cytoplasmic	359	378	0.93
Transmembrane Helix	379	403	0.85
Non-Cytoplasmic	404	411	0.77
Transmembrane Helix	412	434	0.92
Cytoplasmic	435	441	0.76
Transmembrane Helix	442	461	0.94
Non-Cytoplasmic	462	468	0.78
Transmembrane Helix	469	488	0.94
Cytoplasmic	489	505	0.90
Transmembrane Helix	506	527	0.84
Non-Cytoplasmic	528	545	0.67
Transmembrane Helix	546	564	0.49
Cytoplasmic	565	772	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVSQGQWK YHKALSLLAF QSFGVVYGDL STSPLYVFKS ALSGLDDYSD EATVFGLFSL  60
   61 IFWTLTLIPL LKYVIIVLAA DDNGEGGTFA LYSLLCRHAK MSLLPNQQAA DEELSTYYQP 120
  121 GVDRTAMSSP FKRFLEKHKK LRTCLLLFVL FGACMVIGDG VLTPTISVLA ALSGLQDKDT 180
  181 GGLGNGWVVL IACVVLVGLF ALQHRGTHRV AFAFAPIVVL WLLSIGIIGL YNIIRWNPRV 240
  241 CLALSPHYIV KFFKITGRDG WISLGGVLLA VTGTEAMFAD LGHFTAASIR LAFVGVIYPC 300
  301 LVLQYMGQAA FLSKNMDAVH DSFYLSIPRT VFWPMFVLAS LAAIVGSQSI ISATFSIVKQ 360
  361 CLSLGCFPRV KVVHTSRWIY GQIYIPEINW ILMCLCLAVT IGFRDINIIG NAYGLVCITV 420
  421 MFVTTWLMAL VIIFVWKKNI MIALLFLIFF GSIEGAYLSA SFIKVPQGGW TPIALAFVFM 480
  481 FIMYVWHYGT RRKYLFDLQN KVSMKWILTL GPSLGIVRVP GIGLIYTELV TGVPAIFSHF 540
  541 VTNLPAFHQI LVFVCVKSVP VPYVPADERY LIGRIGPRQY RMYRCIVRYG YKDVQKDDEN 600
  601 FENHLVMSIA KFIQMEAEEA ASSGSYESSN EGRMAVIHTT DATGTGLVMR DSNEGTSLTR 660
  661 SSKSGTLQSL QSIYEQESGS LSRRRVRFQI AEEEQVNPQV RDELSDLLEA KEAGVAYIIG 720
  721 HSYVKARKNS NFLKSFAIDY AYSFLRKNCR GPSVTLHIPH ISLIEVGMIY YV