YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7107456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLRPVSVC DTTPLQRFES QSSSGEEPSS PTASSIIAAA SGPNHNNNNN VKLDLQLPTF  60
   61 VDSTRSQGSL YAVASNKKPP LRGPRQIFGR ILTDLCLLSC VGLPMLGFSL WGEAVKRGFF 120
  121 CDDSSLRHPY RDSTMPSWIL YLMCGALPLT VMLVVEFFRG QDKRLHSPFP KSTMCSGYHL 180
  181 CHLELPTWLV ECYHRMGIFI FGLGVEQLST NIAKYSIGRL RPHFYTLCQP VMKDGTTCSD 240
  241 PINAARYIED FTCAAVDITS KQLKDMRLSF PSGHASFACY SMLYLVIYLH RRMQWKQLRM 300
  301 LCHLLQFLLL MFAWYTALTR VSDYKHHWSD VLAGSGIGLT YAVVVTSTMW

Type	Start	End	Confidence
Cytoplasmic	1	86	0.99
Transmembrane Helix	87	110	0.86
Non-Cytoplasmic	111	137	0.92
Transmembrane Helix	138	158	0.95
Cytoplasmic	159	299	0.70
Transmembrane Helix	300	318	0.95
Non-Cytoplasmic	319	325	0.56
Transmembrane Helix	326	348	0.82
Cytoplasmic	349	350	0.55