YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3885482
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	83	0.95
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	116	0.84
Transmembrane Helix	117	145	0.74
Non-Cytoplasmic	146	155	0.71
Transmembrane Helix	156	176	0.85
Cytoplasmic	177	321	0.99
Transmembrane Helix	322	343	0.93
Non-Cytoplasmic	344	388	0.91
Transmembrane Helix	389	411	0.90
Cytoplasmic	412	421	0.74
Transmembrane Helix	422	442	0.85
Non-Cytoplasmic	443	445	0.68
Transmembrane Helix	446	465	0.87
Cytoplasmic	466	498	0.87
Transmembrane Helix	499	518	0.91
Non-Cytoplasmic	519	552	0.84
Transmembrane Helix	553	572	0.85
Cytoplasmic	573	714	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLVFSLVA LVPGDPAATL AGGDSASPAT IEQIRQELNL NDPFLVQYKD WLVGAVQFDF  60
   61 GNSLYTQQPV AEELAQRLPV TLSLAVAVFI LVIPFSVIIG VIGGLRPNAF VDRVLQFLTS 120
  121 LAVSMPPFWV ALVLISIFAV NLGVLPAYGF SPFTDGPVAW LETIILPGCG HRTGLCRRAV 180
  181 QAGPGRPGRH DAVVLHPDRL GKGWIDTASC HGPRAEELGD TRSDRDGFAD RIDSWWNRHH 240
  241 RTDLQHSRNW KLHARSGYQQ GRCRDPGSGD HLRDRQRHRQ SWRRHHLRIS QPESARVMKT 300
  301 RKSKGSEGEF ARAARRFRHN PVAMTALIFV LVVAIAGFMY SFVAPYDPNE QLDVAPFSGP 360
  361 SADHWFGTDG LGRDVLSRLL AGASVSLRFS VIVVVTALIV ALPIGLFSGY IGRWPDTLLM 420
  421 RIMEGIHSFP AIVLAIAIVG ILGPSLLNAG IAVAVAVVPG FARLIRAQAL SVREEVFIDA 480
  481 SRAIGTPTRR ILLRHLFPNV LSPLIVQVAV VLGFALLAEA GLSYLGLGVQ PPQASWGSML 540
  541 RQATDSQLTN PWGVLPPGIA IVLVVLAFNT IGEGLRTALG TSAPVRKLGR LGLTAVDRAV 600
  601 ADHEPLPTTS TKGKGDLLVV DKLAVEVQRE DGAVRILDDV SFSIAAGETL GLVGESGSGK 660
  661 SVTSLTIMRL LPSPPTKVTN GGIYFEGRDL LSLPFKEMSA LRGSEIAMVF QDPL