YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7021482
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSGLDENP FGEPNLDNPF ADPAIQQARR LQSGAALVSL EDYNPFEEQA KPQLQINSTN  60
   61 TAAVVQPLSQ NIPPPQTSSL GASAPSTSIQ ITSEELQRRQ EELDRKAAEL DRREQQLQGN 120
  121 VPQLNNWPPL PDNFCVKPCF YQDFEVEIPP EFQKLVKRLY YIWIFYTMTL LANVIGGLIF 180
  181 WFHAGEFETF FLAIFYTMLF SPASYVCWFR PAYKAFRNDS SFNFMVFFFI YFFQTLYSIV 240
  241 QAVGFNKMGY CGFITAIGQF DGQASGIIVG ILLLNVAFCF TAVAVANVLM ITKIHSIYRS 300
  301 TGASMAKAQA EFTTEFLRNQ HVQEAASSAV NTAINSQFNN SRY

Type	Start	End	Confidence
Cytoplasmic	1	161	0.99
Transmembrane Helix	162	182	0.97
Non-Cytoplasmic	183	189	0.79
Transmembrane Helix	190	209	0.96
Cytoplasmic	210	221	0.85
Transmembrane Helix	222	245	0.86
Non-Cytoplasmic	246	265	0.94
Transmembrane Helix	266	290	0.91
Cytoplasmic	291	343	0.98