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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5326833
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALSAVAAR QQQLLLNGSL KGKGQSQSQG QSRQTLPGHR ASVRSESGSG SSHTIPATGK  60
   61 SPPVPHSLAA KISSSASGSK NCNLLSASSN SCHKLNAHAQ GSGAGSGSGS GSGSGPPGHS 120
  121 HYAAASPKSS VSSNGHLNKY CLTDLTRRKA EFNRQLSAPT DYTHHSSSNG SQQEGSSEAN 180
  181 EGHEPVGEST ITVASAGVSY PHPYSYPYHY AHHASSATAP ANLKASLQLH SFGSHHPCPY 240
  241 PARPTSTSCT NSFNRRHIRR HKGKLGDRLL SGDSEESVRC SYCSVLNVND NDLRISFENT 300
  301 CTDSLVTAFD DEALLICDQG TEMVHFDDVS LYGTPKEEPM PNIPIVSEKV SANFLKSQLQ 360
  361 SWFQPTDNRL AMKLFGSRKA LVKERIRQKT SGHWVIHPCS SFRFYWDLCM LLLLVANLII 420
  421 LPVAISFFND DLSTRWIAFN CLSDTIFLID IVVNFRTGIM QQDNAEQVIL DPKLIAKHYL 480
  481 RTWFFLDLIS SIPLDYIFLI FNQIMKLQDF SDSFQILHAG RALRILRLAK LLSLVRLLRL 540
  541 SRLVRYVSQW EEVYFLNMAS VFMRIFNLIC MMLLIGHWSG CLQFLVPMLQ GFPSNSWVSI 600
  601 NELQESYWLE QYSWALFKAM SHMLCIGYGR FPPQSLTDMW LTMLSMISGA TCYALFLGHA 660
  661 TNLIQSLDSS RRQYREKVKQ VEEYMAYRKL PRDMRQRITE YFEHRYQGKF FDEELILGEL 720
  721 SEKLREDVIN YNCRSLVASV PFFANADSNF VSDVVTKLKY EVFQPGDIII KEGTIGTKMY 780
  781 FIQEGVVDIV MANGEVATSL SDGSYFGEIC LLTNARRVAS VRAETYCNLF SLSVDHFNCV 840
  841 LDQYPLMRKT METVAAERLN KIGKNPNIMH QKDEQLSNPE SNTITAVVNA LAAEADDCKD 900
  901 DDMDLKENLL HGSESSIAEP VQTIREGLPR PRSGEFRALF EGNTP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle