YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16209722
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKENQLETT DCGVSDHGSP PIKNEEHEVP RYSSDKDTGL PTCRVCQCAE SDRRGDAALG  60
   61 FLGITPPVSE PRRSNAGEET VDQRSSVVKS SGFIELISPD GEVFVCANDD IEMGAWQHRD 120
  121 KLLELGCSCK NDLALVHYAC ALKWFVNHGS TVCEICGKTT ENIRTVDFNK VVIALKDYAA 180
  181 LRERTADGDP NPVVVNNNTS SSGIDPDAVA AIRRQRLSEI SLWFGPHCST NNNNSSNSAA 240
  241 AGTASSQVTS EQPVGIVNFD ILPMESRATK WAVEGTGILL ATGLLTVTLA WLIAPRVGKR 300
  301 TAKSGLHILL GGLCALTVVI FFRFVVLTRI RYGPARYWAI LFVFWFLVFG IWASRSHASH 360
  361 SST

Type	Start	End	Confidence
Cytoplasmic	1	270	0.66
Transmembrane Helix	271	294	0.88
Non-Cytoplasmic	295	304	0.58
Transmembrane Helix	305	327	0.93
Cytoplasmic	328	334	0.62
Transmembrane Helix	335	354	0.93
Non-Cytoplasmic	355	363	0.56