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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16197837
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHGHGHHAH HHGGAVVIAG SGVGTGLGSG ATSVIMQHQQ QQQQQQNMHK KNSIRNGGDV  60
   61 LKRTRAQSAY ELSQDLLEKQ IELLERKYGG VRARNAAVTI QRAFRHYMMV KKFASITAMA 120
  121 KAEKRLSRRM VVTASSLGLA EEGASSSSAY GSATESQLTE QQQQQQAQQQ QQPRVTIMAG 180
  181 PAGAASPGLS RTPPTRSLSM RERRQLDCSP IPRSQSGASP ASISSSTVST SALASHPHVN 240
  241 LLHAAEPHYY NAQALPQGAA YYTSYHGSPH DLSYASSADT SLNASWVNTS GHSPHTPYYS 300
  301 AAQIYMRPKG GSTTPTPSCS GSTGSGSGGS GSGSSKKVPP EVPKRTSSIT AQQQTQLLLL 360
  361 QRQTPPPPSL LRTNGLCKTA ENGSLTSVQS SGSDSSVTSA ERNLNSDLGS DRSNSPHTWK 420
  421 RGTALNSSQQ FSTHSADSAG AVSGGGVGVA GGAGVYAAQM QAAVAAATAA GGMPPADDHA 480
  481 ISSHTSAAQY EQHEQQQHEQ QQLQAAAAAA GVAQNYKMSE TIRKRQYRVG LNLFNKKPEK 540
  541 GITYLIRRGF LENTPQGVAR FLITRKGLSR QMIGEYLGNL QNQFNMAVLS CFAMELDLSG 600
  601 RQVDVALRKF QAYFRMPGEA QKIERLMEIF SQRYCECNAD IVGRLRSSDT IFVLAFAIIM 660
  661 LNTDLHTPNL KPERRMRVED FIKNLRGIDD CHDIDKDMLM GIYDRVKSDE FKPGSDHVTQ 720
  721 VMKVQATIVG KKPNLALPHR RLVCYCRLYE IPDVNKKERP GVHQREVFLF NDLLVITKIF 780
  781 SKKKTSVTYT FRNSFPLCGT VVTLLDMPNY PFCIQLSQKV DGKILITFNA RNEHDRCKFA 840
  841 EDLKESISEM DEMESLRIEA ELERQKSARN RAPGNAENRD SGVADVEVCP CPYQQGSQAS 900
  901 GEQAPNSADN SQQLKRSALS NSLLDMHEQF GNEKPQRRGS VGSLDSGMSI SFQSTTTSSA 960
  961 SRENAAAIAA AANAAAAAKM RFNMPPTAAI ATPSNVYAAP GMQAYTHANF VQQSQAAYML1020
 1021 QQQQMLQQQA QMQAQAQAQA QAQAQAQAQA QAQAQAQPLT GRIPGRERKA SRTDENGRST1080
 1081 EV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle