YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16186205
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	66	0.89
Non-Cytoplasmic	67	81	0.90
Transmembrane Helix	82	102	0.91
Cytoplasmic	103	110	0.90
Transmembrane Helix	111	130	0.92
Non-Cytoplasmic	131	144	0.79
Transmembrane Helix	145	164	0.89
Cytoplasmic	165	176	0.77
Transmembrane Helix	177	200	0.74
Non-Cytoplasmic	201	226	0.83
Transmembrane Helix	227	245	0.95
Cytoplasmic	246	282	0.85
Transmembrane Helix	283	301	0.79
Non-Cytoplasmic	302	318	0.76
Transmembrane Helix	319	341	0.83
Cytoplasmic	342	352	0.87
Transmembrane Helix	353	375	0.87
Non-Cytoplasmic	376	387	0.69
Transmembrane Helix	388	411	0.80
Cytoplasmic	412	417	0.76
Transmembrane Helix	418	440	0.64
Non-Cytoplasmic	441	484	0.79
Transmembrane Helix	485	507	0.75
Cytoplasmic	508	525	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIRRKPTG SNADQELLID EPLKSEKVAE HQKPDIRGDR RNIAILLFLY VLQGIPIGLI  60
   61 AAIPMLLQNR GASYKQQAEF SFAYWPFSLK LLWAPIVDSL YIRRFGRRKS WLVPVQYLLG 120
  121 AFMLLLSLHV DRWLGGNGVD PNVPLLTLLF FLLNFLAATQ DIAVDGWALT MLKRCNVGYA 180
  181 STCNSVGQTA GYFLGYVVFI ALESKDFCNT YIRDVPLEDG MITLPRFLWF WGITFVVATT 240
  241 LVAIFKKEND IEDAHMDARY TEEHELNISE SYKILWDMVC MRPVQILAVI LLTVKVTFAA 300
  301 SDAVTSLKLI DAGVPKDKLA LLAIPLIPLQ LILPLAVGRY TNGPRPMDVY LKAIPYRIIM 360
  361 ATVATGLAYI TPYIVRGGAV PAYYYVLLIT SYAIYQVFLY SMFVAAMAFF AKISDPAVGG 420
  421 TYMTFLNTLC NLGGNWPNTV VLWLVDVLTW KQCSNNAENT CQGKEEQQSC EASAGKCEIT 480
  481 FDGYYLESGI CVLYGIVWLL LVRKWIVYLQ DLPVRSWLVV KQKSR