YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16186077
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINSYFTTK RGRAVGVSLA GAGLGQVLIP HLVRYLLDNH GFRYAVLSMS SLSLFGLFGA  60
   61 AFLKPLNPPA KHNNRKHIRL LTEADGEKTS PLQVVIVPTN QSKIERSPPN VDTLCSRMGQ 120
  121 RLVQAMDLEL LKDLVFWSII VGMALVYTAT INFTMIFPGF LGQTAQLNSQ MVAFCMSLVA 180
  181 GADIVCRLLL PIVTDYLRIP YRVVFLIGIV GLFVARCVLA ENQALPVIIS MSVLTGMMKS 240
  241 ATVINNNLTI SAHCRSEKLA GGLGLSMMSK GVIVITVGQL LGWVRDYADS YLICLYAQGV 300
  301 ILLVVVLVWT PEILYRHRRQ RCATNKSMET QSIDAAEVAK LNS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.91
Transmembrane Helix	14	33	0.94
Non-Cytoplasmic	34	43	0.76
Transmembrane Helix	44	63	0.95
Cytoplasmic	64	133	0.96
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	169	0.80
Transmembrane Helix	170	190	0.93
Cytoplasmic	191	198	0.89
Transmembrane Helix	199	220	0.90
Non-Cytoplasmic	221	226	0.74
Transmembrane Helix	227	248	0.86
Cytoplasmic	249	258	0.91
Transmembrane Helix	259	282	0.88
Non-Cytoplasmic	283	291	0.76
Transmembrane Helix	292	311	0.95
Cytoplasmic	312	343	0.96