YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16182654
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNSLKKLPV RMLANAARQQ SAAMSSATGL PPPLTFLTDD EKMMKETVAK LAQEQIQPLV  60
   61 KKMDFEHKFD PSVLKAVFEN GLMGIEIDTE LGGSGCNFMT NIVVVEELSK IDPAVAAFVD 120
  121 IHNTLVNSLM IKFGNAEQKA KYLPKLAQEY AGSFALTEPG AGSDAFSLKT VAKKDGSHYV 180
  181 INGSKMWISN SDVAGVFLIF ANAKPEDGYR GITTFIVDRE TPGLIVNKPE DKLGIRASGT 240
  241 CQLTFDNVRV PEENILGTFG HGYKYAAGFL NEGRIGIAAQ MVGLAQGTFD ATIPYLLERK 300
  301 QFGDAIYNFQ SMQHQIATVA TEIEAARLMT YNAARLQEQG VPFQKEAAMA KYYASEVAQR 360
  361 AAIKCVDWMG GVGFTRDFPQ EKYYRDVKIG AIYEGTTNMQ LSTIAKCIKK DYAA

Type	Start	End	Confidence
Signal Peptide	1	25	0.55
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	414	0.99