YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6959526
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCHRKTSIIL SMNSVAYSSI RYLPLLLRYG RALPLLNNPH ALEQEHHESE SDLVYYGVVS  60
   61 MFLVVLGGVF AGLTLGLMGQ DEIYLTVINT SGTQKEKQLS GKVLRLISRG KHWVLVTLLL 120
  121 SNVITNETLP IVLDRCLNGG WQAVISSTIL IVVFGEIIPQ SICVKYGLEV GAFFAPFVLV 180
  181 LMYLMYPVAY PIALLLDYIL GEDHGTVYKK SGLKTLVTLH QTMGVERLTT DEVTIISAVL 240
  241 DLKDKKVKEI MTPIENVFTL SADKILDEKT IEEIFNSGFS RIPIHLPNEP MNFIGMLIVR 300
  301 ILISYDPEDA LPISSFPLAT LPETSPNTSC LNILNYFQEG KSHMCIVSER PGSSNGSIGV 360
  361 VTLEDVIEEL IGEEIVDESD VFVDIHQHIM REQPGPLSKR HVTSYLHHLY TTSSKDSCVP 420
  421 LLNSKLNNYS SINEHKPVNH SHPPNLPNGS QLQLAPSNLA SNPLDIKKSF VTIKKLPPGE 480
  481 LISPSNKDYS NEHLRLNEQQ GEISRQNH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	26	0.42
Non-Cytoplasmic	27	52	0.56
Transmembrane Helix	53	77	0.86
Cytoplasmic	78	111	0.60
Transmembrane Helix	112	131	0.60
Non-Cytoplasmic	132	138	0.73
Transmembrane Helix	139	159	0.86
Cytoplasmic	160	169	0.61
Transmembrane Helix	170	190	0.88
Non-Cytoplasmic	191	508	0.86