YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGT2A_UMBRA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKDQHLQQ KVKHTLEAIP SPRYAPLRVP LRRRLQTLAV LLWCSMMSIC MFIFFFLCSI  60
   61 PVLLWFPIIL YLTWILVWDK APENGGRPIR WLRNAAWWKL FAGYFPAHVI KEADLDPSKN 120
  121 YIFGYHPHGI ISMGSFCTFS TNATGFDDLF PGIRPSLLTL TSNFNIPLYR DYLMACGLCS 180
  181 VSKTSCQNIL TKGGPGRSIA IVVGGASESL NARPGVMDLV LKRRFGFIKI AVQTGASLVP 240
  241 TISFGENELY EQIESNENSK LHRWQKKIQH ALGFTMPLFH GRGVFNYDFG LLPHRHPIYT 300
  301 IVGKPIPVPS IKYGQTKDEI IRELHDSYMH AVQDLYDRYK DIYAKDRVKE LEFVE

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	57	0.90
Non-Cytoplasmic	58	61	0.53
Transmembrane Helix	62	78	0.71
Cytoplasmic	79	94	0.50
Transmembrane Helix	95	110	0.32
Non-Cytoplasmic	111	127	0.57
Transmembrane Helix	128	146	0.46
Cytoplasmic	147	355	0.56