YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5853323
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.42
Transmembrane Helix	8	28	0.48
Non-Cytoplasmic	29	39	0.56
Transmembrane Helix	40	61	0.91
Cytoplasmic	62	69	0.61
Transmembrane Helix	70	91	0.61
Non-Cytoplasmic	92	101	0.84
Transmembrane Helix	102	125	0.89
Cytoplasmic	126	138	0.94
Transmembrane Helix	139	158	0.94
Non-Cytoplasmic	159	164	0.82
Transmembrane Helix	165	188	0.88
Cytoplasmic	189	205	0.91
Transmembrane Helix	206	230	0.91
Non-Cytoplasmic	231	242	0.80
Transmembrane Helix	243	264	0.91
Cytoplasmic	265	329	0.56
Transmembrane Helix	330	352	0.72
Non-Cytoplasmic	353	396	0.67
Transmembrane Helix	397	419	0.87
Cytoplasmic	420	438	0.62
Transmembrane Helix	439	459	0.91
Non-Cytoplasmic	460	465	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAALGICSA AQCAMCCGGT AASMCCSACP SCTNASSSRF MYAFILLVGT VLGAIALSPG  60
   61 LQDTLKKMPF CINSTSSYSS GALSAVSGGS LQVDCEYALG YMAVYRVCFG MACFFALMSL 120
  121 IMLGVKSSRD PRSHIQNNFW PLKFLICFGA AIGAIFIPDG SFGPAMMWVG LIGGLAFILV 180
  181 QLVIIVDFAH SLAENWIESA ENSRGYYYAL AGVTLLCYIL SLTGITLLYI YFTTSTGCGI 240
  241 NKFFISINLI FCLAISVISI LPAVQERLPH SGLLQSSLVT LYTVYLTWSA VANNPEKECN 300
  301 PGMFGMMEGF GNATTTAAPS THTTRVTFDT TNIIGLVVWL LCILYNCISS AVEVSKISHD 360
  361 NSEKRVLTEA LSDTEAGTDG SGKPSTDTET EGVTYSWSMF HLVFVCASLY VMMTLTNWYK 420
  421 PHSEIELFNG NEASMWVKIV SSWLGVFIYG WSLAAPIVLT NRDFS