YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACD1_SHEEP
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLTEAAAA GGGASAARSA GPPPAPLPLS STSPGCAAAM ASSEEDGTNG GASEASDERE  60
   61 AVGKRRRLGL LATIWLTFYN IAMTAGWLVL AIAMVRFYME KGTHKGLYKS IQKTLKFFQT 120
  121 FALLEIVHCL IGIVPTSVLV AGVQVSSRIF MVWLVTHSIK PIQNEESVVL FLVAWTVTEI 180
  181 TRYSFYTFSL LDHLPYFIKW ARYNFFIILY PVGVAGELLT IYAALPYVKK TGMFSIRLPN 240
  241 KYNVSFDYYY FLLITMASYI PLFPQLYFHM LRQRRKVLHG EVIVEKDD

Type	Start	End	Confidence
Cytoplasmic	1	70	0.78
Transmembrane Helix	71	94	0.85
Non-Cytoplasmic	95	123	0.72
Transmembrane Helix	124	146	0.85
Cytoplasmic	147	204	0.66
Transmembrane Helix	205	225	0.94
Non-Cytoplasmic	226	247	0.71
Transmembrane Helix	248	268	0.93
Cytoplasmic	269	288	0.74