YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33468712
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIRTMQIWG FLLSVTGWIF VSCSMAMEAW KVAPIGGVGG SNIISVGWHW SSLWRECFTD  60
   61 SASTTRCYDF PVLWAVKGYL QIVRALLMAG MGVGVLAIIL SLVGMECTYI GGNDNEKNRS 120
  121 VRAAGICHVS GGKSLHNVIV CWRLLVMLFM LSVFIQSITT LQLLACNMNW EFRCFLDGRD 180
  181 VLFRS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.82
Transmembrane Helix	8	27	0.92
Non-Cytoplasmic	28	32	0.53
Transmembrane Helix	33	52	0.57
Cytoplasmic	53	81	0.51
Transmembrane Helix	82	105	0.86
Non-Cytoplasmic	106	138	0.53
Transmembrane Helix	139	166	0.76
Cytoplasmic	167	185	0.56