YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11279064, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	130	0.95
Transmembrane Helix	131	148	0.81
Non-Cytoplasmic	149	167	0.61
Transmembrane Helix	168	195	0.71
Cytoplasmic	196	206	0.66
Transmembrane Helix	207	229	0.88
Non-Cytoplasmic	230	236	0.54
Transmembrane Helix	237	256	0.84
Cytoplasmic	257	315	0.40
Transmembrane Helix	316	339	0.90
Non-Cytoplasmic	340	372	0.55
Transmembrane Helix	373	397	0.78
Cytoplasmic	398	408	0.56
Transmembrane Helix	409	431	0.85
Non-Cytoplasmic	432	443	0.45
Transmembrane Helix	444	463	0.89
Cytoplasmic	464	470	0.37
Transmembrane Helix	471	492	0.87
Non-Cytoplasmic	493	507	0.49
Transmembrane Helix	508	535	0.80
Cytoplasmic	536	703	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQTPYKKKK PPYSTSPHSS LPTAKEKNQK LQQKKPPKPY PSSRQMGTED YTFPQGAEEL  60
   61 HRRHHTVEAP QPQPFLKSLQ YSVKETLFPD DPFRQFKNQN ASRKFVLGLK YFLPIFEWAP 120
  121 RYNLKFFKSD LIAGITIASL AIPQGISYAK LANLPPILGL YSSFVPPLVY AVLGSSRDLA 180
  181 VGTVAVASLL TGAMLSKEVD AEKDPKLYLH LAFTATFFAG VLEASLGIFR LGFIVDFLSH 240
  241 ATIVGFMGGA ATLVSLQQLK GIFGLKHFTD STDVISVMRS VFSQTHEWRW ESGVLGCGFL 300
  301 FFLLSTRYFS IKKPKFFWVA AMAPLTSVIL GSLLVYFTHA ERHGVQVIGD LKKGLNPLSG 360
  361 SDLIFTSPYM STAVKTGLIT GIIALAEGVA VGRSFAMFKN YNIDGNKEMI AFGMMNIVGS 420
  421 FTSCYLTTGP FSRSAVNYNA GCKTAMSNIV MAIAVMFTLL FLTPLFHYTP LVVLSAIIIS 480
  481 AMLGLIDYQA AIHLWKVDKF DFLVCMSAYV GVVFGSVEIG LVVAVAISIA RLLLFVSRPK 540
  541 TAVKGNIPNS MIYRNTEQYP SSRTVPGILI LEIDAPIYFA NASYLRERII RWIDEEEERV 600
  601 KQSGESSLQY IILDMSAVGN IDTSGISMMV EIKKVIDRRA LKLVLSNPKG EVVKKLTRSK 660
  661 FIGDHLGKEW MFLTVGEAVE ACSYMLHTFK TEPASKNEPW NNV