YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2209105
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILYPKPT SYLYQPFIKA YFSLNMAIFE INNSFLICAV SIALNPLLWN IAARSEYNHK  60
   61 TLTKLANGDS KKACYMLAAC IFVAGIVRDL IYQNALKQQP TLGIFMNPLV QGIAKLIFCF 120
  121 GSVLVLSSMY KLGLVGTYLG DYFGFLLPER VSGFPFNVND NDNPMYNGST LCFLSTALRY 180
  181 GKVAGLLLTL EVFFVYRIAL KFEE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.54
Transmembrane Helix	21	53	0.65
Non-Cytoplasmic	54	72	0.49
Transmembrane Helix	73	92	0.87
Cytoplasmic	93	111	0.50
Transmembrane Helix	112	134	0.83
Non-Cytoplasmic	135	177	0.57
Transmembrane Helix	178	200	0.61
Cytoplasmic	201	204	0.80