YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAT2_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	61	0.92
Non-Cytoplasmic	62	71	0.83
Transmembrane Helix	72	94	0.89
Cytoplasmic	95	117	0.78
Transmembrane Helix	118	139	0.79
Non-Cytoplasmic	140	159	0.87
Transmembrane Helix	160	180	0.90
Cytoplasmic	181	189	0.84
Transmembrane Helix	190	210	0.91
Non-Cytoplasmic	211	230	0.90
Transmembrane Helix	231	252	0.92
Cytoplasmic	253	267	0.89
Transmembrane Helix	268	290	0.90
Non-Cytoplasmic	291	314	0.91
Transmembrane Helix	315	336	0.88
Cytoplasmic	337	361	0.81
Transmembrane Helix	362	381	0.92
Non-Cytoplasmic	382	389	0.68
Transmembrane Helix	390	409	0.93
Cytoplasmic	410	421	0.83
Transmembrane Helix	422	442	0.92
Non-Cytoplasmic	443	447	0.79
Transmembrane Helix	448	469	0.91
Cytoplasmic	470	535	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGARHRHN TDKNHAGGSE SEDFPEASSG GGGVALKKEI GLVSACGIIV GNIIGSGIFV  60
   61 SPKGVLENAG SVGLAVIVWI VTGLITAVGA LCYAELGVTI PKSGGDYSYV KDIFGGLAGF 120
  121 LRLWIAVLVI YPTNQAVIAL TFSNYVLQPL FPTCFPPDSG LRLLAAICLL LLTWVNCSSV 180
  181 RWATRVQDIF TAGKLLALAL IIIMGVVQIC KGEYFWLEPK NAFDNFQEPD IGLIALAFLQ 240
  241 GSFAYGGWNF LNYVTEELVD PYKNLPRAIF ISIPLVTFVY VFANVAYITA MSPQELLASN 300
  301 AVAVTFGEKL LGVMAWIMPI SVALSTFGGV NGSLFTSSRL FFAGAREGHL PSVLAMIHVK 360
  361 RCTPIPALLF TCLSTLLMLV TSDMYTLINY VGFINYLFYG VTVAGQIVLR WKKPDIPRPI 420
  421 KINLLFPIIY LLFWAFLLIF SLWSEPVVCG IGLAIMLTGV PVYFLGVYWQ HKPKCFNDFI 480
  481 ELLTLVSQKM CVVVYPEVDG GSGTEGTRED MEEQQQPICQ PSPGKDKDSL EQSQP