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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|57526446, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEGDRNGR AAGGNFLKRD KKRFFSKKDE KKEKRPTVST FTMFRYSNWL DRLCMVLGTL  60
   61 AAIIHGAGLP LMMLVFGDMT DSFAGAGNLG NITLSNISNT STIDRTEYGK KLEKEMTTYA 120
  121 YYYSGIGAGV LIAAYIQVSF WCLAAGRQVH RIRKQFFHAI MQQEIGWFDV HDVGKLNTRL 180
  181 TNDVSKINEG IGDKIGMFFQ AMATFFTGFI IGFTTGWNLT LVILAIIPVL GLSAAIWAKI 240
  241 LSSFTDKKLL AYAKAGAVAE EVLAAIKTVI AFGGQKKELE RYNKNLEEAK RIGIKKAITA 300
  301 NISMGAAFLL IYASYALAFW YGTSLVLSRE YSIGQVLTVF FSVLIGAFSI GQASPNIEAF 360
  361 ANARGAAYEV FKIIDNKPSI DSYSNTGHKP DNIKGNLEFR NVHFHYPSRN EVKILKGLNL 420
  421 KVGSGQTVAL VGNSGCGKST TVQLMQRLYD PTEGMVSIDG QDIRTINVRY LREIIGVVSQ 480
  481 EPVLFATTIA ENIRYGREDV TMDEIQKAVK EANAYDFIMK LPNKFDTLVG ERGAQLSGGQ 540
  541 KQRIAIARAL VRNPKILLLD EATSALGTES EAVVQAALDK ARKGRTTIVI AHRLSTVRNA 600
  601 DIIAGLDDGV IVEEGSHDEL MGKRGIYFKL VTMQTKGNEL ELENTPGESL SKTDDLYMSS 660
  661 QDSRSSLIRR KSTRRSIRGS QSQDRKLSTE ETLDESVPPV SFWRILKLNI TEWPYFVVGV 720
  721 FCAIINGALQ PAFSVIFSRI IGIFTRNDND ETKRQNSNLF SLLFLILGII SFITFFLQGF 780
  781 TFGKAGEILT RRLRYLVFRS MLRQDVSWFD DPKNTTGALT TRLANDAAQV KGAVGSRLAV 840
  841 ITQNIANLGT GIIISLIYGW QLTLLLLAIV PIIAVAGVIE MKMLSGQALK DKKELEGAGK 900
  901 IATEAIENFR TVVSLTREER FEYMYAQSLQ VPYRNSLRRA HVFGITFSIT QAMMYFSYAG 960
  961 CFRFGAYLVA QGIMEFQDVL LVFSAVVFGA MAVGQVSTFA PDYAKAKVSA AHVINIIEKI1020
 1021 PLIDSYSTEG LKPSTVEGSV AFNDVVFNYP TRPDVPVLRG LSLEVKKGQT LALVGSSGCG1080
 1081 KSTVVQLLER FYDPLAGTVF IDGKEVKQLN VQWLRAHMGI VSQEPILFDC SIGENIAYGD1140
 1141 NSRVVSQEEI EHAAKEANIH SFIEMLPDKY NTRVGDKGTQ LSGGQKQRIA IARALVRQPH1200
 1201 ILLLDEATSA LDTESEKVVQ EALDKAREGR TCIVIAHRLS TIQNADLIVV FQNGRIKEHG1260
 1261 THQQLLAQKG IYFTMVSVQA GTKRQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle