YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RPE1_ORYSA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAAKIA PSMLSSDFAN LAAEADRMVR LGADWLHMDI MDGHFVPNLT IGAPVIQSLR  60
   61 KHTKAYLDCH LMVTNPSDYV EPLAKAGASG FTFHIEVSRD NWQELIQSIK AKGMRPGVSL 120
  121 RPGTPVEEVF PLVEAENPVE LVLVMTVEPG FGGQKFMPEM MEKVRALRKK YPSLDIEVDG 180
  181 GLGPSTIDVA ASAGANCIVA GSSIFGAAEP GEVISALRKS VEGSQNKS

Type	Start	End	Confidence
Signal Peptide	1	25	0.52
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	228	0.99