YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15983468
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPKPQSQN PFPFWFYFTV VVSLATIIFI SLSLFSSQND PRSWFLSLPP ALRQHYSNGR  60
   61 TIKVQVNSNE SPIEVFVAES GSIHTETVVI VHGLGLSSFA FKEMIQSLGS KGIHSVAIDL 120
  121 PGNGFSDKSM VVIGGDREIG FVARVKEVYG LIQEKGVFWA FDQMIETGDL PYEEIIKLQN 180
  181 SKRRSFKAIE LGSEETARVL GQVIDTLGLA PVHLVLHDSA LGLASNWVSE NWQSVRSVTL 240
  241 IDSSISPALP LWVLNVPGIR EILLAFSFGF EKLVSFRCSK EMTLSDIDAH RILLKGRNGR 300
  301 EAVVASLNKL NHSFDIAQWG NSDGINGIPM QVIWSSEASK EWSDEGQRVA KALPKAKFVT 360
  361 HSGSRWPQES KSGELADYIS EFVSLLPKSI RRVAEEPIPE EVQKVLEEAK AGDDHDHHHG 420
  421 HGHAHAGYSD AYGLGEEWTT T

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	35	0.94
Non-Cytoplasmic	36	441	0.94