YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15983299
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	36	0.92
Non-Cytoplasmic	37	69	0.88
Transmembrane Helix	70	90	0.95
Cytoplasmic	91	98	0.92
Transmembrane Helix	99	119	0.93
Non-Cytoplasmic	120	128	0.67
Transmembrane Helix	129	150	0.84
Cytoplasmic	151	162	0.85
Transmembrane Helix	163	188	0.86
Non-Cytoplasmic	189	211	0.95
Transmembrane Helix	212	231	0.96
Cytoplasmic	232	293	0.97
Transmembrane Helix	294	312	0.92
Non-Cytoplasmic	313	340	0.93
Transmembrane Helix	341	362	0.88
Cytoplasmic	363	369	0.75
Transmembrane Helix	370	392	0.88
Non-Cytoplasmic	393	402	0.75
Transmembrane Helix	403	425	0.84
Cytoplasmic	426	437	0.84
Transmembrane Helix	438	461	0.86
Non-Cytoplasmic	462	480	0.87
Transmembrane Helix	481	500	0.93
Cytoplasmic	501	538	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGELKVLNA LDSAKTQWYH FTAIVIAGMG FFTDAYDLFS ISLVTKLLGR IYYFNPASKS  60
   61 PGSLPPNVSA AVNGVAFCGT LAGQLFFGWL GDKMGRKKVY GMTLMLMVIC CLASGLSFGS 120
  121 SAKGVMATLC FFRFWLGFGI GGDYPLSATI MSEYANKRTR GAFIAAVFAM QGFGNLTGGI 180
  181 VAIIVSAAFK ARFDAPAYRD DRAGSTVPQA DYAWRIVLML GAIPALLTYY WRMKMPETAR 240
  241 YTALVAKNAK QAAADMTQVL NVEIVEEQEK ADEVARREQF GLFSRQFLRR HGRHLLGTTV 300
  301 CWFVLDIAFY SSNLFQKDIY TAVQWLPKAD TMSALEEMFK ISRAQTLVAL CGTIPGYWFT 360
  361 VFFIDIIGRF VIQLGGFFFM TAFMLGLAVP YHHWTTPGTT SGFVVMYAFT FFFANFGPNS 420
  421 TTFIVPAEIF PARLRSTCHG ISAAAGKAGA IVGSFGFLYA AQSTDASKTD AGYPPGIGVR 480
  481 NSLFFLAGCN VIGFFFTFLV PESKGKSLEE LSGENEDDDD VPEAPSTADH RTAPAPPA