YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3176882
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTSGTKTE SGVGETIRVV IHALLIALVI RTFLFQPFNI PSGSMKATLL VGDYLFVSKY  60
   61 SYGYSHYSIP FSPPVFSGRL WGSDPNRGDI VVFRLPKDDS TDYIKRVIGL PGDRVQMKDG 120
  121 LLYINDTPVE RQRMSEYVGE DPCGSEGGGI SRVKRWKETL PNGVSYETLD CADNGYMDTT 180
  181 NVYTVPAGHF FMMGDNRDNS TDSRFLGQVG YVPQENLIGR AQMIFFSIAE GEHAWMFWRW 240
  241 PWAVRWNRFF KIVR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.69
Transmembrane Helix	16	35	0.76
Non-Cytoplasmic	36	254	0.81