YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6581004
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	56	0.93
Non-Cytoplasmic	57	76	0.92
Transmembrane Helix	77	98	0.87
Cytoplasmic	99	117	0.87
Transmembrane Helix	118	138	0.90
Non-Cytoplasmic	139	145	0.73
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	175	0.86
Transmembrane Helix	176	196	0.90
Non-Cytoplasmic	197	208	0.71
Transmembrane Helix	209	225	0.64
Cytoplasmic	226	244	0.62
Transmembrane Helix	245	264	0.92
Non-Cytoplasmic	265	286	0.66
Transmembrane Helix	287	311	0.73
Cytoplasmic	312	331	0.63
Transmembrane Helix	332	349	0.58
Non-Cytoplasmic	350	360	0.71
Transmembrane Helix	361	382	0.86
Cytoplasmic	383	416	0.93
Transmembrane Helix	417	436	0.89
Non-Cytoplasmic	437	441	0.64
Transmembrane Helix	442	460	0.88
Cytoplasmic	461	476	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGFRVLHL VRPFLSFLPE VQTADRKVPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG  60
   61 ADPFYWMRVI LASNRGTVME LGITPIVTSG LVMQLLAGSK IIEVDNNVRE DRALLNGAQK 120
  121 LLGILIAIGE AVAYVLSGMY GSVGQLGVGN AILIILQLCF AGIIVICLDE LLQKGYGLGS 180
  181 GISLFIATNI CENIIWKAFS PTTINSGRGA EFEGAVIALF HLLITRSDKV RALREAFYRQ 240
  241 NLPNVTNLLA TVLIFLIVIY FQGFRVVLPV RSKNARGQQG SYPIKLFYTS NMPIILQSAL 300
  301 VSNLYFISQL LHRKYSGNFF VDLLGKWKES EYGGGQSAPV GGIAYYITAP SSLADMAANP 360
  361 FHALFYLVFM LSACALFSKT WIEVSGSSAK DVAKQLKEQQ MVMPGHRESN LQKELNRYIP 420
  421 TAAAFGGICI GALTVLADFM GAIGSGTGIL LAVTIIYQYF ETFEKERASE LGFFGF