YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15810691, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNIRKTHP LLKIVNGAFI DLPTPSNISI WWNFGSLLGL CLIMQIMTGL FLAMHYTADV  60
   61 STAFSSVAHI CRDVNYGWLI RNIHANGASM FFICIYLHVA RGLYYGSYLY KKTWNIGVVL 120
  121 LLLVMGTAFV GYVLPWGQMS FWGATVITNL LSAVPYIGDT LVQWIWGGFS VDNATLTRFF 180
  181 AFHFLLPFLI AGTSLIHLLF LHETGSNNPT GLNSDSDKVT FHPYYSYKDA LGFMVMLVLL 240
  241 AFLALFMPNL LGDPENFTPA NPLVTPPHIK PEWYFLFAYA ILRSIPNKLG GVLALAFSIL 300
  301 ILLVVPLLHT SKQRANTFRP FSQVLFWTLI ADTLILTWIG GQPVEYPFTM IGQVASILYF 360
  361 ALFLILIPVT GWLENKFMNW NCPSSLKLKH RPCKPKIEG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.84
Transmembrane Helix	30	55	0.82
Non-Cytoplasmic	56	82	0.75
Transmembrane Helix	83	105	0.84
Cytoplasmic	106	113	0.71
Transmembrane Helix	114	134	0.94
Non-Cytoplasmic	135	178	0.43
Transmembrane Helix	179	201	0.92
Cytoplasmic	202	229	0.47
Transmembrane Helix	230	252	0.88
Non-Cytoplasmic	253	288	0.51
Transmembrane Helix	289	310	0.90
Cytoplasmic	311	320	0.73
Transmembrane Helix	321	341	0.88
Non-Cytoplasmic	342	349	0.69
Transmembrane Helix	350	373	0.86
Cytoplasmic	374	399	0.83