YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151946595
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFEDYFSFQ IFFIFLRESL EIVVIVSILL TIVKQGLSVE DDSPFEGSSS SAGLPSPNTN  60
   61 TNADSTTAFL QAGPSDGNAI GTSATAANNK SRPLNVEEEE EIYEYSNELR DQDRESDEHT 120
  121 ADNVKLYQKL KIQILAGGAF GLLLCMLIGG AFVSIFYHIG TDLWTLSEHY YEGVLSLVAS 180
  181 VIISVMGLFF LRMGKLREKF RVKLASIIYS KDNNLLGNKT QKGVKFSEKY SFFILPFITT 240
  241 LREGLEAVVF IGGIGIDQPL SSIPLSMVLA TAISTVFGIF FFRYSSSLSL KICLVVATCF 300
  301 LYLIAAGLFS KGVWQLELQD YVNKCNGQDM SEVGNGPGSY DISRSVWHVN CCNGEKDGGW 360
  361 MIFTAIFGWT NSATVGSVIS YNAYWLVLIC ALKLLMIEEK YGYIPYLPIS WQKKRIMKRL 420
  421 SIAKASLDLK HHTSELNSST SEPDSQRRSK DSSVPLIIDS SGSAN

Type	Start	End	Confidence
Cytoplasmic	1	134	0.88
Transmembrane Helix	135	159	0.88
Non-Cytoplasmic	160	172	0.85
Transmembrane Helix	173	191	0.97
Cytoplasmic	192	231	0.94
Transmembrane Helix	232	254	0.90
Non-Cytoplasmic	255	261	0.78
Transmembrane Helix	262	282	0.94
Cytoplasmic	283	289	0.80
Transmembrane Helix	290	309	0.92
Non-Cytoplasmic	310	366	0.95
Transmembrane Helix	367	388	0.82
Cytoplasmic	389	465	0.92